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<title>Results Summary</title>
	<meta name="description" content="Automatically BLAST sequences and compare their results BLAST sessions and establish Homology. Page generated with DHDS">
    <meta name="keywords" content="Biotools, Protein, DHDS, Bioinformatics, GAP, SSearch, Saierlab">
    <meta name="copyright" content="Saierlab - 2010">
    <meta name="author" content="Vamsee Reddy">
    <meta name="email" content="symphony.dev@gmail.com">
    <meta name="Distribution" content="Global">
    <meta name="Rating" content="General">
    <meta name="Robots" content="INDEX,FOLLOW">
</head>

<body>

<div class="container">
  <div class="header">
    <h1>+ Results Summary<br />
  <br />
    </h1><!-- end .header --></div>
  <div class="content">
    <h2>[SS-Search Results]</h2>
    <p>Found 3 Results.</p>
    <table width="100%" border="0" cellpadding="3" cellspacing="3">
      <tr>
        <td width="8%" bgcolor="#6F7D94">Target</td>
        <td width="23%" bgcolor="#6F7D94">Range</td>
        <td width="7%" bgcolor="#6F7D94">Target</td>
        <td width="25%" bgcolor="#6F7D94">Range</td>
        <td width="8%" bgcolor="#6F7D94">&nbsp;</td>
        <td width="10%" bgcolor="#6F7D94">Score</td>
        <td width="9%" bgcolor="#6F7D94">GSAT</td>
        <td width="10%" bgcolor="#6F7D94">View</td>
      </tr>
            <tr>
        <td bgcolor="#9FB3D3">&nbsp;Orf1</td>
        <td bgcolor="#B5CCF0">&nbsp;(1 MEFE-RSRD 660)</td>
        <td bgcolor="#9FB3D3">&nbsp;Mma4</td>
        <td bgcolor="#B5CCF0">&nbsp;(1 MESA-SEKN 668)</td>
        <td bgcolor="#9FB3D3">&nbsp;1390</td>
        <td bgcolor="#B5CCF0">&nbsp;276.02</td>
        <td bgcolor="#B5CCF0">&nbsp;113.69</td>
        <td bgcolor="#B5CCF0"><a href="#0">View</a></td>
      </tr>
            <tr>
        <td bgcolor="#9FB3D3">&nbsp;Orf1</td>
        <td bgcolor="#B5CCF0">&nbsp;(1 MEFE-DRLT 650)</td>
        <td bgcolor="#9FB3D3">&nbsp;Dba1</td>
        <td bgcolor="#B5CCF0">&nbsp;(3 VEIP-DLIS 649)</td>
        <td bgcolor="#9FB3D3">&nbsp;1277</td>
        <td bgcolor="#B5CCF0">&nbsp;217.58</td>
        <td bgcolor="#B5CCF0">&nbsp;108.76</td>
        <td bgcolor="#B5CCF0"><a href="#1">View</a></td>
      </tr>
            <tr>
        <td bgcolor="#9FB3D3">&nbsp;Orf1</td>
        <td bgcolor="#B5CCF0">&nbsp;(1 MEFE-RLTE 651)</td>
        <td bgcolor="#9FB3D3">&nbsp;Mac2</td>
        <td bgcolor="#B5CCF0">&nbsp;(1 MTSN-QLEE 652)</td>
        <td bgcolor="#9FB3D3">&nbsp;1219</td>
        <td bgcolor="#B5CCF0">&nbsp;204.09</td>
        <td bgcolor="#B5CCF0">&nbsp;105.51</td>
        <td bgcolor="#B5CCF0"><a href="#2">View</a></td>
      </tr>
          </table>
    <h2>&nbsp;</h2>
    <h2>[Detailed  Results]</h2>
    <p>
    <ul>
<a name='0'>0</a>		<li>
		Orf1	(1 MEFE-RSRD 660)	Mma4	(1 MESA-SEKN 668)	1390	276.02		<br>
		<div class='fasta'>
<pre>
>Orf1 gi|147919101|YP_687168.1 glutathione-regulated K(+) efflux system protein [uncultured methanogenic archaeon RC-I]
MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADMINADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLTEAFNDLRSRD
>Mma4 gi|294496404|YP_003542897.1 Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1) [Methanohalophilus mahii DSM 5219]
MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFINNPDNIDILAEIGIILLLFTIGVELSLKELWDMKRSVVLGGGLQVLFTTLGTLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAEL
HSLHGRTILSILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARWLIPHILYHIAKTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLVISESEYSHQALNNILPFKDVFLSIFFVSIG
MLLNVQFFLDNPLMILLVTIGVMLFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVEYGLLDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGFARKDVTKMYDKKEKMSSHLIIVG
FGFNGKTVAKAANAAGIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATATRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIED
ARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETITNPGGDVRILEGDILVLLGSHEDMKEIGDFFTDLSEKN	<div class='gap'>
########################################
# Program: needle
# Rundate: Tue 17 May 2011 16:00:29
# Commandline: needle
#    -asequence /tmp/ramdisk/689e8549330d3a84d0de1eca097805d3
#    -bsequence /tmp/ramdisk/52cf62e40a06f413e48157e8bd7c22a9
#    -gapopen 8
#    -gapextend 2
#    -outfile /tmp/ramdisk/4de47b5735489a494747f829fe4786fe
# Align_format: srspair
# Report_file: /tmp/ramdisk/4de47b5735489a494747f829fe4786fe
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 
# 2: 
# Matrix: EBLOSUM62
# Gap_penalty: 8.0
# Extend_penalty: 2.0
#
# Length: 672
# Identity:     282/672 (42.0%)
# Similarity:   441/672 (65.6%)
# Gaps:          16/672 ( 2.4%)
# Score: 1401.0
# 
#
#=======================================

                   1 MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFT     50
                     ||..:|.::.|:...:|..|.||::.::..|:|..|||:|:||:|:|...
                   1 MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFIN     50

                  51 NMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVA    100
                     |...|:.:||||::|||||||:|.|.|.|.::|:...:||.:|:....:.
                  51 NPDNIDILAEIGIILLLFTIGVELSLKELWDMKRSVVLGGGLQVLFTTLG    100

                 101 TFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDELDTPQGNVIMG    150
                     |...|:.||...:.::..||::||||||||||.||.|.||.:..|..|:.
                 101 TLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAELHSLHGRTILS    150

                 151 IIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLW    200
                     |::|:|:|.|.|::|.|.::|..||...|:..::|.::.|.|.::....|
                 151 ILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARW    200

                 201 VVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLI    250
                     ::|.:|:.||:||:.|||:|.::||||::|.||...|||||||||||||:
                 201 LIPHILYHIAKTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLV    250

                 251 ISESPYSRQALGTILPFRYVFTSFFFISIGMMLDLHFFISNPWIIIAAAI    300
                     ||||.||.|||..||||:.||.|.||:||||:|::.||:.|| ::|....
                 251 ISESEYSHQALNNILPFKDVFLSIFFVSIGMLLNVQFFLDNP-LMILLVT    299

                 301 IGILIKLFSGTIT---TLLLGYTIRVAVIEGISMAQVGEFSFILASLGLA    347
                     ||::  ||.|.::   :::|||.:|.:::.|:::||||||||:|:..|:.
                 300 IGVM--LFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVE    347

                 348 ADMINADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASS    397
                     ..:::..|||:||..:|||||.:.|.||||..::..:.|||||.:||...
                 348 YGLLDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGF    397

                 398 C-----PIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPD    442
                     .     .:....|.::.||:|:|:|.||:.:|:||.||.|||.::|.||:
                 398 ARKDVTKMYDKKEKMSSHLIIVGFGFNGKTVAKAANAAGIPYLVIETNPE    447

                 443 TVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITST    492
                     :|....:|||.|.|||||.|.|||..::::|||.::.||:..||||:...
                 448 SVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATATRRVIWL    497

                 493 LRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRY    542
                     .|:..|::|||.||||..|...|.|.||:||:|||||||||||..:||||
                 498 AREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRY    547

                 543 FIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIG    592
                     .:|:.:|.:...:.|:..|::|||.:....:.:.:......|:|.::|:.
                 548 LVPEDQIKKFIEDARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVP    597

                 593 EDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGT-VLEPGDLVY    641
                     ....::|.::::|.||.::|:|:|.:.|..:.|.||.... :|| ||::.
                 598 LGADVVGMTLEELSLRQRFGITVLAIRRGLETITNPGGDVRILE-GDILV    646

                 642 AFGRHDRLTEA---FNDLRSRD    660
                     ..|.|:.:.|.   |.||..::
                 647 LLGSHEDMKEIGDFFTDLSEKN    668


#---------------------------------------
#---------------------------------------

Shuffled: 500 times		Average Quality: 33.1 +/- 12.032204448387

Three Z-Scores are given based on three potential Averages

Z-Score: 113.69 (112.69,113.69,114.69) (S.Ds From average)

</div></pre>
	<table width="100%" border="0" cellpadding="3" cellspacing="3">
		  <tr>
		    <td bgcolor="#8C9FBF"><strong>Movable Protein visualizer Tool [<a href="http://saier-144-21.ucsd.edu/mpvt/">MPVT</a>] </strong></td>
	      </tr>
		  <tr>
		    <td height="55" bgcolor="#DCE4F3">
            		      <form action="http://saier-144-21.ucsd.edu/mpvt/repeatf.php" method="post" name="form1" target="_new" id="form1">
              <input type='hidden' name='g1' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDELDTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIGMMLDLHFFISNPWIIIAAAIIGILIKLFSGTIT...TLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADMINADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSC.....PIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGT.VLEPGDLVYAFGRHDRLTEA...FNDLRSRD' />
              <input type='hidden' name='g2' value='MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFINNPDNIDILAEIGIILLLFTIGVELSLKELWDMKRSVVLGGGLQVLFTTLGTLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAELHSLHGRTILSILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARWLIPHILYHIAKTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLVISESEYSHQALNNILPFKDVFLSIFFVSIGMLLNVQFFLDNP.LMILLVTIGVM..LFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVEYGLLDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGFARKDVTKMYDKKEKMSSHLIIVGFGFNGKTVAKAANAAGIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATATRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIEDARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETITNPGGDVRILE.GDILVLLGSHEDMKEIGDFFTDLSEKN' />
		        <input type='hidden' name='s1' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
                <input type='hidden' name='s2' value='MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFINNPDNIDILAEIGIILLLFTI
GVELSLKELWDMKRSVVLGGGLQVLFTTLGTLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAEL
HSLHGRTILSILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARWLIPHILYHIA
KTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLVISESEYSHQALNNILPFKDVFLSIFFVSIG
MLLNVQFFLDNPLMILLVTIGVMLFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVEYGL
LDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGFARKDVTKMYDKKEKMSSHLIIVG
FGFNGKTVAKAANAAGIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATA
TRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIED
ARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETI
TNPGGDVRILEGDILVLLGSHEDMKEIGDFFTDLSEKNTKNTEE
' />
		        <input type="submit" name="button2" id="button2" value="View Full Alignment with BOTH sequences" />
		        </form></td>
	      </tr>
		  </table>
    
<table width="100%" border="0" cellpadding="3" cellspacing="3">
  <tr>
    <td bgcolor="#8C9FBF"><strong><a href="http://saier-144-21.ucsd.edu/hmmgap/">HMMGAP</a></strong></td>
  </tr>
  <tr>
    <td bgcolor="#DCE4F3"><pre>
<div class='hmmgap'><pre><b>    88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>      63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>            71%<font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font>      74%<font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font>    69%<font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font>            88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>                100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>              83%<font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font>    60%<font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font>      61%<font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font>    85%<font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font>      57%   <font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font>    51%<font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font>      63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>                                                                                                                                                                                                                                                                                                      </b> [Relative hydrophobicity]<br><i>    1-------------------      2-----------------            3-------------------      4-----------------------    5-------------------            6-------------------                7-------------------              8----------------    9-------------------      10------------------    11----------------      12   ----------------    13----------------      14----------------                                                                                                                                                                                                                                                                                                      </i><br>MEFE<B>LLKNLGILLAFAILALLICY</B>RFKLPE<B>IIGLFITGLLMGPHGIGV</B>FTNMHEIEYIAE<B>IGVVLLLFTIGLEFSFKSLI</B>NLKKQF<B>FIGGTVQMTLIFVATFLIASMLGL</B>SQNA<B>AILAGFMLSLSSTAIVLKLL</B>QDRDELDTPQGN<B>VIMGIIIFEDIIAVFMMLAI</B>PLMSGKAGNIIESVPT<B>LVLAAIVIGIILIAGTLWVV</B>PRVLHRIARTRSNE<B>LFVLCIVVICLAMASLT</B>SQFG<B>LSLALGAFLAGLIISESPYS</B>RQALGT<B>ILPFRYVFTSFFFISIGMML</B>DLHF<B>FISNPWIIIAAAIIGILI</B>KLFSGT<B>IT...TLLLGYTIRVAVIEGI</B>SMAQ<B>VGEFSFILASLGLAADMI</B>NADLYQ<B>IFLATAILTMAASPFLIS</B>YSQKLSDTLCRLPLPARLKASSC.....PIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGT.VLEPGDLVYAFGRHDRLTEA...FNDLRSRD [14 TMSs]</pre>

<pre><b>   89%<font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font><font style="opacity:0.89;">=</font>      71%<font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font>    79%<font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font><font style="opacity:0.79;">=</font>            61%<font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font>      68%<font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font><font style="opacity:0.68;">=</font>            88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>        100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>                  87%<font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font><font style="opacity:0.87;">=</font>    63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>            77%<font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font>     81%<font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font>  <font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font>      47%<font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font><font style="opacity:0.47;">=</font>                    52%<font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font>                              34%<font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font><font style="opacity:0.34;">=</font>                                                                                                                                                                                                                                          </b> [Relative hydrophobicity]<br><i>   1-------------------      2-------------------    3------------------            4-----------------------      5-------------------            6-----------------------        7-------------------                  8----------------    9-------------------            10------------------     11--------  --------------      12----------------                    13----------------------                              14------------------                                                                                                                                                                                                                                          </i><br>MES<B>AILNDIIIIFGISIFVLYIC</B>HKLRIS<B>IIVGFLITGVLVGPYGMGFI</B>NNPD<B>NIDILAEIGIILLLFTIGV</B>ELSLKELWDMKR<B>SVVLGGGLQVLFTTLGTLFAATYL</B>GFGFSE<B>SLFLGFLISLSSTAIVLKTL</B>QKRAELHSLHGR<B>TILSILLFQDVIVVAMIVATPFLA</B>GVGGNDAN<B>SIFMILLKSLAIIIFIMFFA</B>RWLIPHILYHIAKTRNPE<B>LFLLSVIVICLSVAMLT</B>YSAG<B>LSLALGAFLAGLVISESEYS</B>HQALNNILPFKD<B>VFLSIFFVSIGMLLNVQFFL</B>DNP.L<B>MILLVTIGVM..LFKGVVSGFVSMVL</B>GYPLRN<B>SILTGMALAQVGEFSFVL</B>SKFGVEYGLLDNYLYQMFLD<B>ISILTMAVTSFSISYSPSVAANVL</B>RLPLPHKLKCGFARKDVTKMYDKKEKMSSH<B>LIIVGFGFNGKTVAKAANAA</B>GIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATATRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIEDARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETITNPGGDVRILE.GDILVLLGSHEDMKEIGDFFTDLSEKN [14 TMSs]</pre></div></pre></td>
  </tr>
</table>
    </pre>

        </div>
	
		<br>
		<table width="100%" border="0" cellpadding="5" cellspacing="5">
		  <tr>
		    <td bgcolor="#8C9FBF">>Orf1 gi|147919101|YP_687168.1 glutathione-regulated K(+) efflux system protein [uncultured methanogenic archaeon RC-I]&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3">MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3"><table width="100%" border="0">
		      <tr>
                <td width="16%"><strong>Tools:</strong></td>
			    <td width="8%"><form action="http://www.enzim.hu/hmmtop/server/hmmtop.cgi" method="post" name="form1" target="_new" id="form1">
			      <input type='hidden' name='if' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
			      <input type="submit" name="button2" id="button2" value="HMM TOP" />
			      </form></td>
			    <td width="76%"><form action='http://saier-144-21.ucsd.edu:8080/what/TestWHAT' method='post' target='_new'>
			      <input type ='hidden' name='WindowSize' value='19' />
			      <input type ='hidden' name='Angle' value='100' />
			      <input type ='hidden' name='output' value='1' />
			      <input type ='hidden' name='ss' value='1' />
			      <input type ='hidden' name='Sequence' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
			      <input type="submit" name="button" id="button" value="W.H.A.T" />
			      </form></td>
			  
			    </tr>
		    </table></td>
	      </tr>
		  </table>
          <br />
          <table width="100%" border="0" cellpadding="5" cellspacing="5">
		  <tr>
		    <td bgcolor="#8C9FBF">>Mma4 gi|294496404|YP_003542897.1 Kef-type potassium/proton antiporter, CPA2 family (TC 2.A.37.1) [Methanohalophilus mahii DSM 5219]&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3">MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFINNPDNIDILAEIGIILLLFTI
GVELSLKELWDMKRSVVLGGGLQVLFTTLGTLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAEL
HSLHGRTILSILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARWLIPHILYHIA
KTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLVISESEYSHQALNNILPFKDVFLSIFFVSIG
MLLNVQFFLDNPLMILLVTIGVMLFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVEYGL
LDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGFARKDVTKMYDKKEKMSSHLIIVG
FGFNGKTVAKAANAAGIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATA
TRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIED
ARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETI
TNPGGDVRILEGDILVLLGSHEDMKEIGDFFTDLSEKNTKNTEE
&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3"><table width="100%" border="0">
		      <tr>
                <td width="16%"><strong>Tools:</strong></td>
			    <td width="8%"><form action="http://www.enzim.hu/hmmtop/server/hmmtop.cgi" method="post" name="form1" target="_new" id="form1">
			      <input type='hidden' name='if' value='MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFINNPDNIDILAEIGIILLLFTI
GVELSLKELWDMKRSVVLGGGLQVLFTTLGTLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAEL
HSLHGRTILSILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARWLIPHILYHIA
KTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLVISESEYSHQALNNILPFKDVFLSIFFVSIG
MLLNVQFFLDNPLMILLVTIGVMLFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVEYGL
LDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGFARKDVTKMYDKKEKMSSHLIIVG
FGFNGKTVAKAANAAGIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATA
TRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIED
ARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETI
TNPGGDVRILEGDILVLLGSHEDMKEIGDFFTDLSEKNTKNTEE
' />
			      <input type="submit" name="button2" id="button2" value="HMM TOP" />
			      </form></td>
			    <td width="76%"><form action='http://saier-144-21.ucsd.edu:8080/what/TestWHAT' method='post' target='_new'>
			      <input type ='hidden' name='WindowSize' value='19' />
			      <input type ='hidden' name='Angle' value='100' />
			      <input type ='hidden' name='output' value='1' />
			      <input type ='hidden' name='ss' value='1' />
			      <input type ='hidden' name='Sequence' value='MESAILNDIIIIFGISIFVLYICHKLRISIIVGFLITGVLVGPYGMGFINNPDNIDILAEIGIILLLFTI
GVELSLKELWDMKRSVVLGGGLQVLFTTLGTLFAATYLGFGFSESLFLGFLISLSSTAIVLKTLQKRAEL
HSLHGRTILSILLFQDVIVVAMIVATPFLAGVGGNDANSIFMILLKSLAIIIFIMFFARWLIPHILYHIA
KTRNPELFLLSVIVICLSVAMLTYSAGLSLALGAFLAGLVISESEYSHQALNNILPFKDVFLSIFFVSIG
MLLNVQFFLDNPLMILLVTIGVMLFKGVVSGFVSMVLGYPLRNSILTGMALAQVGEFSFVLSKFGVEYGL
LDNYLYQMFLDISILTMAVTSFSISYSPSVAANVLRLPLPHKLKCGFARKDVTKMYDKKEKMSSHLIIVG
FGFNGKTVAKAANAAGIPYLVIETNPESVREGISKGENIFYGDATQESVLEKADIDSAKIMIVGISDATA
TRRVIWLAREMNPNIHIIARTRYLQEMGPLYEQGANEVIPEEFETSVEIFVRLLRRYLVPEDQIKKFIED
ARAGGYDMFRSVSSDPLNFEQMQFDIPDVNIVSLRVPLGADVVGMTLEELSLRQRFGITVLAIRRGLETI
TNPGGDVRILEGDILVLLGSHEDMKEIGDFFTDLSEKNTKNTEE
' />
			      <input type="submit" name="button" id="button" value="W.H.A.T" />
			      </form></td>
			  
			    </tr>
		    </table></td>
	      </tr>
		  </table>
		<br><hr >
		</li>
        <a name='1'>1</a>		<li>
		Orf1	(1 MEFE-DRLT 650)	Dba1	(3 VEIP-DLIS 649)	1277	217.58		<br>
		<div class='fasta'>
<pre>
>Orf1 gi|147919101|YP_687168.1 glutathione-regulated K(+) efflux system protein [uncultured methanogenic archaeon RC-I]
MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADMINADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLT
>Dba1 gi|256829863|YP_003158591.1 sodium/hydrogen exchanger [Desulfomicrobium baculatum DSM 4028]
VEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVGASHEVEMFAEVGVILLLFVIGLELSLDELIRLKRPVFVGGAAQVLLTIAVMGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKAQL
AAPHGRIALGALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFIGARKVVPLVLGAVIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGLIMSESEYSHSALEGVLPFRDVFTSVFFVSIG
MLLDPAFVATHLPQVMGLTLAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGHNLLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQKDADTDLSDHLIIAGFGLGGHHL
ARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVATARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGYGM
LRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQWIFEAGDRVHVFGEQDLIS	<div class='gap'>
########################################
# Program: needle
# Rundate: Tue 17 May 2011 16:00:50
# Commandline: needle
#    -asequence /tmp/ramdisk/43b5c64a2755297ffcb9cfdc36110593
#    -bsequence /tmp/ramdisk/f5736e5c4d9a73afa74779d07b6eee51
#    -gapopen 8
#    -gapextend 2
#    -outfile /tmp/ramdisk/19ebefe9be7c679b00e002af107fcc01
# Align_format: srspair
# Report_file: /tmp/ramdisk/19ebefe9be7c679b00e002af107fcc01
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 
# 2: 
# Matrix: EBLOSUM62
# Gap_penalty: 8.0
# Extend_penalty: 2.0
#
# Length: 652
# Identity:     272/652 (41.7%)
# Similarity:   403/652 (61.8%)
# Gaps:           7/652 ( 1.1%)
# Score: 1285.0
# 
#
#=======================================

                   1 MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFT     50
                     :|..:|.:..::...:...::..::.::|.|||..:||:|.|||.:|:..
                   1 VEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVG     50

                  51 NMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVA    100
                     ..||:|..||:||:||||.||||.|...||.||:..|:||..|:.|....
                  51 ASHEVEMFAEVGVILLLFVIGLELSLDELIRLKRPVFVGGAAQVLLTIAV    100

                 101 TFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDELDTPQGNVIMG    150
                     ..|......:....::..||:.:|||||||||:|.::.:|..|.|.:.:|
                 101 MGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKAQLAAPHGRIALG    150

                 151 IIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVL-AAIVIGIILIAGTL    199
                     .:||:|:..|.|||.:|:::|.:||...::..:.| .|.|.|:|.| |..
                 151 ALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFI-GAR    199

                 200 WVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGL    249
                     .|||.||..:.||||.|||::..:.:|.|:|.|||..||||:||||||||
                 200 KVVPLVLGAVIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGL    249

                 250 IISESPYSRQALGTILPFRYVFTSFFFISIGMMLDLHFFISNPWIIIAAA    299
                     |:|||.||..||..:||||.||||.||:||||:||..|..::...::...
                 250 IMSESEYSHSALEGVLPFRDVFTSVFFVSIGMLLDPAFVATHLPQVMGLT    299

                 300 IIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAAD    349
                     :..:|.|.........:|||.:.|:::.|:.:.|:|||||:||.:|:..:
                 300 LAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGHN    349

                 350 MINADLYQIFLATAILTMAASPFLISYSQKLSDTLCR-LPLPARLKASSC    398
                     :::|..||.|||.||:|||.:||||:....:|..|.| ||:...|||.. 
                 350 LLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQK-    398

                 399 PIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQ    448
                        ....:::|||:|.|:||.|.:|||||:|:.|.|.|:|||||||..|:
                 399 ---DADTDLSDHLIIAGFGLGGHHLARAARASGIRYVILEMNPDTVRRER    445

                 449 AKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFP    498
                     .|||||.:|||:...||||:|:..|:|..:.||:..|..||.:|.|...|
                 446 DKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVATARFQNP    495

                 499 HLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSR    548
                     .|||:||||:.||.:.|.::||.|||.||:|||||:|..||..|.:|:..
                 496 ALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGD    545

                 549 IDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLM    598
                     |::...|:|:|.|.:.|.|........:|....|......:|:.....:.
                 546 IERFVREIRAEGYGMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVE    595

                 599 GKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDR    648
                     |||:.:..||.::|:|::.|.|:.:...||||..:.|.||.|:.||..|.
                 596 GKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQWIFEAGDRVHVFGEQDL    645

                 649 LT    650
                     ::
                 646 IS    647


#---------------------------------------
#---------------------------------------

Shuffled: 500 times		Average Quality: 31.79 +/- 11.522721476302

Three Z-Scores are given based on three potential Averages

Z-Score: 108.76 (107.76,108.76,109.76) (S.Ds From average)

</div></pre>
	<table width="100%" border="0" cellpadding="3" cellspacing="3">
		  <tr>
		    <td bgcolor="#8C9FBF"><strong>Movable Protein visualizer Tool [<a href="http://saier-144-21.ucsd.edu/mpvt/">MPVT</a>] </strong></td>
	      </tr>
		  <tr>
		    <td height="55" bgcolor="#DCE4F3">
            		      <form action="http://saier-144-21.ucsd.edu/mpvt/repeatf.php" method="post" name="form1" target="_new" id="form1">
              <input type='hidden' name='g1' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDELDTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVL.AAIVIGIILIAGTLWVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIGMMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADMINADLYQIFLATAILTMAASPFLISYSQKLSDTLCR.LPLPARLKASSCPIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLT' />
              <input type='hidden' name='g2' value='VEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVGASHEVEMFAEVGVILLLFVIGLELSLDELIRLKRPVFVGGAAQVLLTIAVMGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKAQLAAPHGRIALGALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFI.GARKVVPLVLGAVIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGLIMSESEYSHSALEGVLPFRDVFTSVFFVSIGMLLDPAFVATHLPQVMGLTLAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGHNLLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQK....DADTDLSDHLIIAGFGLGGHHLARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVATARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGYGMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQWIFEAGDRVHVFGEQDLIS' />
		        <input type='hidden' name='s1' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
                <input type='hidden' name='s2' value='MSVEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVGASHEVEMFAEVGVILLLF
VIGLELSLDELIRLKRPVFVGGAAQVLLTIAVMGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKA
QLAAPHGRIALGALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFIGARKVVPLVLGA
VIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGLIMSESEYSHSALEGVLPFRDVFTSVFFVS
IGMLLDPAFVATHLPQVMGLTLAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGH
NLLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQKDADTDLSDHLIIAGFGLGGH
HLARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVA
TARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGY
GMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQ
WIFEAGDRVHVFGEQDLISRKAVLFIGEEGESWNGL
' />
		        <input type="submit" name="button2" id="button2" value="View Full Alignment with BOTH sequences" />
		        </form></td>
	      </tr>
		  </table>
    
<table width="100%" border="0" cellpadding="3" cellspacing="3">
  <tr>
    <td bgcolor="#8C9FBF"><strong><a href="http://saier-144-21.ucsd.edu/hmmgap/">HMMGAP</a></strong></td>
  </tr>
  <tr>
    <td bgcolor="#DCE4F3"><pre>
<div class='hmmgap'><pre><b>    88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>      63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>            71%<font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font>      74%<font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font>    69%<font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font>            88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>                100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>              83%<font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font>    60%<font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font>      61%<font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font>    85%<font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font>      57%<font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font>    51%<font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font>      63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>                                                                                                                                                                                                                                                                                    </b> [Relative hydrophobicity]<br><i>    1-------------------      2-----------------            3-------------------      4-----------------------    5-------------------            6-------------------                7-- -----------------              8----------------    9-------------------      10------------------    11----------------      12----------------    13----------------      14----------------                                                                                                                                                                                                                                                                                    </i><br>MEFE<B>LLKNLGILLAFAILALLICY</B>RFKLPE<B>IIGLFITGLLMGPHGIGV</B>FTNMHEIEYIAE<B>IGVVLLLFTIGLEFSFKSLI</B>NLKKQF<B>FIGGTVQMTLIFVATFLIASMLGL</B>SQNA<B>AILAGFMLSLSSTAIVLKLL</B>QDRDELDTPQGN<B>VIMGIIIFEDIIAVFMMLAI</B>PLMSGKAGNIIESVPT<B>LVL.AAIVIGIILIAGTLWVV</B>PRVLHRIARTRSNE<B>LFVLCIVVICLAMASLT</B>SQFG<B>LSLALGAFLAGLIISESPYS</B>RQALGT<B>ILPFRYVFTSFFFISIGMML</B>DLHF<B>FISNPWIIIAAAIIGILI</B>KLFSGT<B>ITTLLLGYTIRVAVIEGI</B>SMAQ<B>VGEFSFILASLGLAADMI</B>NADLYQ<B>IFLATAILTMAASPFLIS</B>YSQKLSDTLCR.LPLPARLKASSCPIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLT [14 TMSs]</pre>

<pre><b>  100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>        82%<font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font>      98%<font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font><font style="opacity:0.98;">=</font>        92%<font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font>      92%<font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font>            92%<font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font><font style="opacity:0.92;">=</font>      76%<font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font>                     83%<font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font>      65%<font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font>        81%<font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font>      81%<font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font><font style="opacity:0.81;">=</font>        76%<font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font><font style="opacity:0.76;">=</font>                100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>                                                                                                                                                                                                                                                                                  </b> [Relative hydrophobicity]<br><i>  1-------------------        2-------------------      3-------------------        4-----------------------      5-------------------            6-----------------------      7-------------------                     8------------------      9-------------------        10-----------------      11------------------        12------------------                13-----------------                                                                                                                                                                                                                                                                                  </i><br>VE<B>IPILADAVMIFGLSCAVIVA</B>SHKLRIPT<B>IIGFLLTGVLAGPHCLGLVG</B>ASHEVE<B>MFAEVGVILLLFVIGLELSL</B>DELIRLKR<B>PVFVGGAAQVLLTIAVMGLPLMFF</B>DVGLGK<B>SLFIGFLAALSSTAIVLKVL</B>GEKAQLAAPHGR<B>IALGALIFQDVAVVPMMLLVPVLA</B>GASGNP<B>WLALGEMGLKGAFVAGVIFI.</B>GARKVVPLVLGAVIRTRSRE<B>LFLMTTLGLCFAIALLTST</B>AGLSLS<B>LGAFLAGLIMSESEYSHSAL</B>EGVLPFRD<B>VFTSVFFVSIGMLLDPAFV</B>ATHLPQ<B>VMGLTLAALLAKTLLAAAAG</B>RILGYPLH<B>VSILGGLCLCQIGEFSFVLA</B>GVGMGHNLLSAMEYQY<B>FLAVAIVTMALTPFLIAGV</B>PSISGRLARLLPVGMSLKAQK....DADTDLSDHLIIAGFGLGGHHLARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVATARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGYGMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQWIFEAGDRVHVFGEQDLIS [13 TMSs]</pre></div></pre></td>
  </tr>
</table>
    </pre>

        </div>
	
		<br>
		<table width="100%" border="0" cellpadding="5" cellspacing="5">
		  <tr>
		    <td bgcolor="#8C9FBF">>Orf1 gi|147919101|YP_687168.1 glutathione-regulated K(+) efflux system protein [uncultured methanogenic archaeon RC-I]&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3">MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
&nbsp;</td>
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		  <tr>
		    <td bgcolor="#DCE4F3"><table width="100%" border="0">
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                <td width="16%"><strong>Tools:</strong></td>
			    <td width="8%"><form action="http://www.enzim.hu/hmmtop/server/hmmtop.cgi" method="post" name="form1" target="_new" id="form1">
			      <input type='hidden' name='if' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
			      <input type="submit" name="button2" id="button2" value="HMM TOP" />
			      </form></td>
			    <td width="76%"><form action='http://saier-144-21.ucsd.edu:8080/what/TestWHAT' method='post' target='_new'>
			      <input type ='hidden' name='WindowSize' value='19' />
			      <input type ='hidden' name='Angle' value='100' />
			      <input type ='hidden' name='output' value='1' />
			      <input type ='hidden' name='ss' value='1' />
			      <input type ='hidden' name='Sequence' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
			      <input type="submit" name="button" id="button" value="W.H.A.T" />
			      </form></td>
			  
			    </tr>
		    </table></td>
	      </tr>
		  </table>
          <br />
          <table width="100%" border="0" cellpadding="5" cellspacing="5">
		  <tr>
		    <td bgcolor="#8C9FBF">>Dba1 gi|256829863|YP_003158591.1 sodium/hydrogen exchanger [Desulfomicrobium baculatum DSM 4028]&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3">MSVEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVGASHEVEMFAEVGVILLLF
VIGLELSLDELIRLKRPVFVGGAAQVLLTIAVMGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKA
QLAAPHGRIALGALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFIGARKVVPLVLGA
VIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGLIMSESEYSHSALEGVLPFRDVFTSVFFVS
IGMLLDPAFVATHLPQVMGLTLAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGH
NLLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQKDADTDLSDHLIIAGFGLGGH
HLARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVA
TARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGY
GMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQ
WIFEAGDRVHVFGEQDLISRKAVLFIGEEGESWNGL
&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3"><table width="100%" border="0">
		      <tr>
                <td width="16%"><strong>Tools:</strong></td>
			    <td width="8%"><form action="http://www.enzim.hu/hmmtop/server/hmmtop.cgi" method="post" name="form1" target="_new" id="form1">
			      <input type='hidden' name='if' value='MSVEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVGASHEVEMFAEVGVILLLF
VIGLELSLDELIRLKRPVFVGGAAQVLLTIAVMGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKA
QLAAPHGRIALGALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFIGARKVVPLVLGA
VIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGLIMSESEYSHSALEGVLPFRDVFTSVFFVS
IGMLLDPAFVATHLPQVMGLTLAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGH
NLLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQKDADTDLSDHLIIAGFGLGGH
HLARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVA
TARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGY
GMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQ
WIFEAGDRVHVFGEQDLISRKAVLFIGEEGESWNGL
' />
			      <input type="submit" name="button2" id="button2" value="HMM TOP" />
			      </form></td>
			    <td width="76%"><form action='http://saier-144-21.ucsd.edu:8080/what/TestWHAT' method='post' target='_new'>
			      <input type ='hidden' name='WindowSize' value='19' />
			      <input type ='hidden' name='Angle' value='100' />
			      <input type ='hidden' name='output' value='1' />
			      <input type ='hidden' name='ss' value='1' />
			      <input type ='hidden' name='Sequence' value='MSVEIPILADAVMIFGLSCAVIVASHKLRIPTIIGFLLTGVLAGPHCLGLVGASHEVEMFAEVGVILLLF
VIGLELSLDELIRLKRPVFVGGAAQVLLTIAVMGLPLMFFDVGLGKSLFIGFLAALSSTAIVLKVLGEKA
QLAAPHGRIALGALIFQDVAVVPMMLLVPVLAGASGNPWLALGEMGLKGAFVAGVIFIGARKVVPLVLGA
VIRTRSRELFLMTTLGLCFAIALLTSTAGLSLSLGAFLAGLIMSESEYSHSALEGVLPFRDVFTSVFFVS
IGMLLDPAFVATHLPQVMGLTLAALLAKTLLAAAAGRILGYPLHVSILGGLCLCQIGEFSFVLAGVGMGH
NLLSAMEYQYFLAVAIVTMALTPFLIAGVPSISGRLARLLPVGMSLKAQKDADTDLSDHLIIAGFGLGGH
HLARAARASGIRYVILEMNPDTVRRERDKGEPILFGDASQVAVLEHINVSKARILAVVISDPAAIGRIVA
TARFQNPALHIVVRTRFVSEIEPLLQMGAQEVVAEEYETSVEMFIRVLSTYLVPRGDIERFVREIRAEGY
GMLRRPMLNTADACNLGGVCSSFGATVLRVVPGAFVEGKSLIESRLRKEHGLTVVAVQRDGRTRLNPDPQ
WIFEAGDRVHVFGEQDLISRKAVLFIGEEGESWNGL
' />
			      <input type="submit" name="button" id="button" value="W.H.A.T" />
			      </form></td>
			  
			    </tr>
		    </table></td>
	      </tr>
		  </table>
		<br><hr >
		</li>
        <a name='2'>2</a>		<li>
		Orf1	(1 MEFE-RLTE 651)	Mac2	(1 MTSN-QLEE 652)	1219	204.09		<br>
		<div class='fasta'>
<pre>
>Orf1 gi|147919101|YP_687168.1 glutathione-regulated K(+) efflux system protein [uncultured methanogenic archaeon RC-I]
MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADMINADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLTE
>Mac2 gi|20091926|NP_618001.1 glutathione-regulated potassium-efflux system protein [Methanosarcina acetivorans C2A]
MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQETEHIEVMSEIGVILLLFTIGIEFSLRELLKIKRIVLLGGGLQMSITTVVVSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEI
YSAHGRIALGILIFQDIAAVLIIILAPLLAGEAVVGSDLLDLLFRGIGLVLLTLVSARYVVPFVLFHVAKTRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGLIISESEYAAQALGTVIPFKDMFMSIFFISTGM
MLNLGQMSTHLSLILTATVLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENGIFSETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQQLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVS
GRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQIIEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRAD
HYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLRAETELNPDDILLVISPPEQLEE	<div class='gap'>
########################################
# Program: needle
# Rundate: Tue 17 May 2011 16:01:10
# Commandline: needle
#    -asequence /tmp/ramdisk/b074a53f550b13879657683e9e73b18e
#    -bsequence /tmp/ramdisk/467dc2572be24e152cfb59e860a3762c
#    -gapopen 8
#    -gapextend 2
#    -outfile /tmp/ramdisk/ff89b44eca5109278767b3f39d437a47
# Align_format: srspair
# Report_file: /tmp/ramdisk/ff89b44eca5109278767b3f39d437a47
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: 
# 2: 
# Matrix: EBLOSUM62
# Gap_penalty: 8.0
# Extend_penalty: 2.0
#
# Length: 656
# Identity:     257/656 (39.2%)
# Similarity:   404/656 (61.6%)
# Gaps:           9/656 ( 1.4%)
# Score: 1227.0
# 
#
#=======================================

                   1 MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFT     50
                     |...||.:|.|:...:|..:.|.:|.|:..::|..|.|:|.||:|:|:..
                   1 MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQ     50

                  51 NMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVA    100
                     ....||.::||||:|||||||:|||.:.|:.:|:...:||.:||::..|.
                  51 ETEHIEVMSEIGVILLLFTIGIEFSLRELLKIKRIVLLGGGLQMSITTVV    100

                 101 TFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDELDTPQGNVIMG    150
                     ...:...||.|...|:..|.:::||||||||||||::.|:.:..|.:.:|
                 101 VSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEIYSAHGRIALG    150

                 151 IIIFEDIIAVFMMLAIPLMSGKAGNIIES-VPTLVLAAIVIGIILIAGTL    199
                     |:||:||.||.:::..||::|:|  ::.| :..|:...|.:.::.:....
                 151 ILIFQDIAAVLIIILAPLLAGEA--VVGSDLLDLLFRGIGLVLLTLVSAR    198

                 200 WVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGL    249
                     :|||.||..:|:||:||||:|.||||.||:|.|||..|||.|||||||||
                 199 YVVPFVLFHVAKTRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGL    248

                 250 IISESPYSRQALGTILPFRYVFTSFFFISIGMMLDLHFFISNPWIIIAAA    299
                     |||||.|:.|||||::||:.:|.|.||||.||||:|....::..:|:.|.
                 249 IISESEYAAQALGTVIPFKDMFMSIFFISTGMMLNLGQMSTHLSLILTAT    298

                 300 IIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAAD    349
                     ::.:::|.....:||..:|:.:...::.|.|:|||||||.:.|.:|....
                 299 VLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENG    348

                 350 MINADLYQIFLATAILTMAASPFL--ISYSQKLSDTLCRLPLPARLKAS-    396
                     :.:..:||.|||..:|:|..:||:  :.|...:|..  :|.||..|..: 
                 349 IFSETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQ--QLSLPGILTTNR    396

                 397 -SCPIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVS    445
                      |.......:.:.:||::||||::|||:..||:.|.|||.::|:||:||.
                 397 YSLQDEGQEKKLENHLIVIGYGVSGRNVGIAAQKASIPYMVIEINPETVR    446

                 446 AEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRK    495
                     .|:..|..|.||||..:.||||..::||:..||...|..:|.:|....::
                 447 REKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQIIEVAKR    496

                 496 HFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIP    545
                     ..|.:|||.||.:.........|||.||:.:|||.|:|:|:.||.:|.:|
                 497 LNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVP    546

                 546 KSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDL    595
                     ...|:.:..:||:::|.:.|.|.....|:.......|.|:|.::|:.:..
                 547 VKEIETMNTQLRADHYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHS    596

                 596 PLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGR    645
                     ...||::.||.||.|||||:|.:.||.:.:|:....|.|.|.|::.....
                 597 EAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLRAETELNPDDILLVISP    646

                 646 HDRLTE    651
                     .::|.|
                 647 PEQLEE    652


#---------------------------------------
#---------------------------------------

Shuffled: 500 times		Average Quality: 36.72 +/- 11.280823993838

Three Z-Scores are given based on three potential Averages

Z-Score: 105.51 (104.51,105.51,106.51) (S.Ds From average)

</div></pre>
	<table width="100%" border="0" cellpadding="3" cellspacing="3">
		  <tr>
		    <td bgcolor="#8C9FBF"><strong>Movable Protein visualizer Tool [<a href="http://saier-144-21.ucsd.edu/mpvt/">MPVT</a>] </strong></td>
	      </tr>
		  <tr>
		    <td height="55" bgcolor="#DCE4F3">
            		      <form action="http://saier-144-21.ucsd.edu/mpvt/repeatf.php" method="post" name="form1" target="_new" id="form1">
              <input type='hidden' name='g1' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTIGLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDELDTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIES.VPTLVLAAIVIGIILIAGTLWVVPRVLHRIARTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIGMMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADMINADLYQIFLATAILTMAASPFL..ISYSQKLSDTLCRLPLPARLKAS..SCPIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLTE' />
              <input type='hidden' name='g2' value='MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQETEHIEVMSEIGVILLLFTIGIEFSLRELLKIKRIVLLGGGLQMSITTVVVSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEIYSAHGRIALGILIFQDIAAVLIIILAPLLAGEA..VVGSDLLDLLFRGIGLVLLTLVSARYVVPFVLFHVAKTRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGLIISESEYAAQALGTVIPFKDMFMSIFFISTGMMLNLGQMSTHLSLILTATVLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENGIFSETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQ..QLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVSGRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQIIEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRADHYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLRAETELNPDDILLVISPPEQLEE' />
		        <input type='hidden' name='s1' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
                <input type='hidden' name='s2' value='MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQETEHIEVMSEIGVILLLFTI
GIEFSLRELLKIKRIVLLGGGLQMSITTVVVSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEI
YSAHGRIALGILIFQDIAAVLIIILAPLLAGEAVVGSDLLDLLFRGIGLVLLTLVSARYVVPFVLFHVAK
TRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGLIISESEYAAQALGTVIPFKDMFMSIFFISTGM
MLNLGQMSTHLSLILTATVLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENGIF
SETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQQLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVS
GRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQI
IEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRAD
HYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLR
AETELNPDDILLVISPPEQLEEIRELFENGA
' />
		        <input type="submit" name="button2" id="button2" value="View Full Alignment with BOTH sequences" />
		        </form></td>
	      </tr>
		  </table>
    
<table width="100%" border="0" cellpadding="3" cellspacing="3">
  <tr>
    <td bgcolor="#8C9FBF"><strong><a href="http://saier-144-21.ucsd.edu/hmmgap/">HMMGAP</a></strong></td>
  </tr>
  <tr>
    <td bgcolor="#DCE4F3"><pre>
<div class='hmmgap'><pre><b>    88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>      63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>            71%<font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font><font style="opacity:0.71;">=</font>      74%<font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font>    69%<font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font>            88%<font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font><font style="opacity:0.88;">=</font>                 100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>              83%<font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font>    60%<font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font><font style="opacity:0.6;">=</font>      61%<font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font><font style="opacity:0.61;">=</font>    85%<font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font><font style="opacity:0.85;">=</font>      57%<font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font><font style="opacity:0.57;">=</font>    51%<font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font><font style="opacity:0.51;">=</font>      63%<font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>  <font style="opacity:0.63;">=</font><font style="opacity:0.63;">=</font>                                                                                                                                                                                                                                                                                      </b> [Relative hydrophobicity]<br><i>    1-------------------      2-----------------            3-------------------      4-----------------------    5-------------------            6-------------------                 7-------------------              8----------------    9-------------------      10------------------    11----------------      12----------------    13----------------      14--------------  --                                                                                                                                                                                                                                                                                      </i><br>MEFE<B>LLKNLGILLAFAILALLICY</B>RFKLPE<B>IIGLFITGLLMGPHGIGV</B>FTNMHEIEYIAE<B>IGVVLLLFTIGLEFSFKSLI</B>NLKKQF<B>FIGGTVQMTLIFVATFLIASMLGL</B>SQNA<B>AILAGFMLSLSSTAIVLKLL</B>QDRDELDTPQGN<B>VIMGIIIFEDIIAVFMMLAI</B>PLMSGKAGNIIES.VPT<B>LVLAAIVIGIILIAGTLWVV</B>PRVLHRIARTRSNE<B>LFVLCIVVICLAMASLT</B>SQFG<B>LSLALGAFLAGLIISESPYS</B>RQALGT<B>ILPFRYVFTSFFFISIGMML</B>DLHF<B>FISNPWIIIAAAIIGILI</B>KLFSGT<B>ITTLLLGYTIRVAVIEGI</B>SMAQ<B>VGEFSFILASLGLAADMI</B>NADLYQ<B>IFLATAILTMAASPFL..IS</B>YSQKLSDTLCRLPLPARLKAS..SCPIATPHENITDHLVIIGYGLNGRNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRITSTLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSENYEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDPGTVLEPGDLVYAFGRHDRLTE [14 TMSs]</pre>

<pre><b>    83%<font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font><font style="opacity:0.83;">=</font>      74%<font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font><font style="opacity:0.74;">=</font>        69%<font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font><font style="opacity:0.69;">=</font>        67%<font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font><font style="opacity:0.67;">=</font>        82%<font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font><font style="opacity:0.82;">=</font>            100%<font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font><font style="opacity:1;">=</font>                  77%<font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font><font style="opacity:0.77;">=</font>            93%<font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font><font style="opacity:0.93;">=</font>                    52%<font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font><font style="opacity:0.52;">=</font>            73%<font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font><font style="opacity:0.73;">=</font>        58%<font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font><font style="opacity:0.58;">=</font>            65%<font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font><font style="opacity:0.65;">=</font>                                                                                                                                                                                                                                                                                     </b> [Relative hydrophobicity]<br><i>    1-------------------      2-----------------        3-------------------        4---------------------        5-------------------            6-----------------------                  7-------------------            8-------------------                    9-------------------            10----------------------        11---------------------            12------------------                                                                                                                                                                                                                                                                                     </i><br>MTSN<B>LLTDLLIIFGLSIPVVYIFF</B>RLKISP<B>LVGFLIAGILAGPYGLGL</B>IQETEHIE<B>VMSEIGVILLLFTIGIEFSL</B>RELLKIKR<B>IVLLGGGLQMSITTVVVSFLLW</B>RLGYSPET<B>AVFMGLIVALSSTAIVLKLL</B>QEKGEIYSAHGR<B>IALGILIFQDIAAVLIIILAPLLA</B>GEA..VVGSDLLDLLFRG<B>IGLVLLTLVSARYVVPFVLF</B>HVAKTRNNELFL<B>LSIVVIGLAIAWLTSVAGLS</B>PALGAFLAGLIISESEYAAQ<B>ALGTVIPFKDMFMSIFFIST</B>GMMLNLGQMSTH<B>LSLILTATVLVLVLKTSVNALTTF</B>FIGFPLHT<B>MLLVGFSLAQVGEFSLVTAQVGF</B>ENGIFSETIYQE<B>FLAVTVLSMVLTPFITDLGY</B>YSAVSSQ..QLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVSGRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQIIEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRADHYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLRAETELNPDDILLVISPPEQLEE [12 TMSs]</pre></div></pre></td>
  </tr>
</table>
    </pre>

        </div>
	
		<br>
		<table width="100%" border="0" cellpadding="5" cellspacing="5">
		  <tr>
		    <td bgcolor="#8C9FBF">>Orf1 gi|147919101|YP_687168.1 glutathione-regulated K(+) efflux system protein [uncultured methanogenic archaeon RC-I]&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3">MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3"><table width="100%" border="0">
		      <tr>
                <td width="16%"><strong>Tools:</strong></td>
			    <td width="8%"><form action="http://www.enzim.hu/hmmtop/server/hmmtop.cgi" method="post" name="form1" target="_new" id="form1">
			      <input type='hidden' name='if' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
			      <input type="submit" name="button2" id="button2" value="HMM TOP" />
			      </form></td>
			    <td width="76%"><form action='http://saier-144-21.ucsd.edu:8080/what/TestWHAT' method='post' target='_new'>
			      <input type ='hidden' name='WindowSize' value='19' />
			      <input type ='hidden' name='Angle' value='100' />
			      <input type ='hidden' name='output' value='1' />
			      <input type ='hidden' name='ss' value='1' />
			      <input type ='hidden' name='Sequence' value='MEFELLKNLGILLAFAILALLICYRFKLPEIIGLFITGLLMGPHGIGVFTNMHEIEYIAEIGVVLLLFTI
GLEFSFKSLINLKKQFFIGGTVQMTLIFVATFLIASMLGLSQNAAILAGFMLSLSSTAIVLKLLQDRDEL
DTPQGNVIMGIIIFEDIIAVFMMLAIPLMSGKAGNIIESVPTLVLAAIVIGIILIAGTLWVVPRVLHRIA
RTRSNELFVLCIVVICLAMASLTSQFGLSLALGAFLAGLIISESPYSRQALGTILPFRYVFTSFFFISIG
MMLDLHFFISNPWIIIAAAIIGILIKLFSGTITTLLLGYTIRVAVIEGISMAQVGEFSFILASLGLAADM
INADLYQIFLATAILTMAASPFLISYSQKLSDTLCRLPLPARLKASSCPIATPHENITDHLVIIGYGLNG
RNLARAAKAAKIPYTIVEMNPDTVSAEQAKGEPIHYGDATNEIVLEHLNLENAKIAVIAISNVEATRRIT
STLRKHFPHLHIIVRTRYTSETQVLKELGASEVVPEEFETSVEIFASVLRRYFIPKSRIDQLTAELRSEN
YEVFRSPAQAGYSLDDLVSRESGVDIATVRIGEDLPLMGKSIKDLGLRNKYGVTILMVYRNDKQIYNPDP
GTVLEPGDLVYAFGRHDRLTEAFNDLRSRDVA
' />
			      <input type="submit" name="button" id="button" value="W.H.A.T" />
			      </form></td>
			  
			    </tr>
		    </table></td>
	      </tr>
		  </table>
          <br />
          <table width="100%" border="0" cellpadding="5" cellspacing="5">
		  <tr>
		    <td bgcolor="#8C9FBF">>Mac2 gi|20091926|NP_618001.1 glutathione-regulated potassium-efflux system protein [Methanosarcina acetivorans C2A]&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3">MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQETEHIEVMSEIGVILLLFTI
GIEFSLRELLKIKRIVLLGGGLQMSITTVVVSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEI
YSAHGRIALGILIFQDIAAVLIIILAPLLAGEAVVGSDLLDLLFRGIGLVLLTLVSARYVVPFVLFHVAK
TRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGLIISESEYAAQALGTVIPFKDMFMSIFFISTGM
MLNLGQMSTHLSLILTATVLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENGIF
SETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQQLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVS
GRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQI
IEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRAD
HYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLR
AETELNPDDILLVISPPEQLEEIRELFENGA
&nbsp;</td>
	      </tr>
		  <tr>
		    <td bgcolor="#DCE4F3"><table width="100%" border="0">
		      <tr>
                <td width="16%"><strong>Tools:</strong></td>
			    <td width="8%"><form action="http://www.enzim.hu/hmmtop/server/hmmtop.cgi" method="post" name="form1" target="_new" id="form1">
			      <input type='hidden' name='if' value='MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQETEHIEVMSEIGVILLLFTI
GIEFSLRELLKIKRIVLLGGGLQMSITTVVVSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEI
YSAHGRIALGILIFQDIAAVLIIILAPLLAGEAVVGSDLLDLLFRGIGLVLLTLVSARYVVPFVLFHVAK
TRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGLIISESEYAAQALGTVIPFKDMFMSIFFISTGM
MLNLGQMSTHLSLILTATVLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENGIF
SETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQQLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVS
GRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQI
IEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRAD
HYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLR
AETELNPDDILLVISPPEQLEEIRELFENGA
' />
			      <input type="submit" name="button2" id="button2" value="HMM TOP" />
			      </form></td>
			    <td width="76%"><form action='http://saier-144-21.ucsd.edu:8080/what/TestWHAT' method='post' target='_new'>
			      <input type ='hidden' name='WindowSize' value='19' />
			      <input type ='hidden' name='Angle' value='100' />
			      <input type ='hidden' name='output' value='1' />
			      <input type ='hidden' name='ss' value='1' />
			      <input type ='hidden' name='Sequence' value='MTSNLLTDLLIIFGLSIPVVYIFFRLKISPLVGFLIAGILAGPYGLGLIQETEHIEVMSEIGVILLLFTI
GIEFSLRELLKIKRIVLLGGGLQMSITTVVVSFLLWRLGYSPETAVFMGLIVALSSTAIVLKLLQEKGEI
YSAHGRIALGILIFQDIAAVLIIILAPLLAGEAVVGSDLLDLLFRGIGLVLLTLVSARYVVPFVLFHVAK
TRNNELFLLSIVVIGLAIAWLTSVAGLSPALGAFLAGLIISESEYAAQALGTVIPFKDMFMSIFFISTGM
MLNLGQMSTHLSLILTATVLVLVLKTSVNALTTFFIGFPLHTMLLVGFSLAQVGEFSLVTAQVGFENGIF
SETIYQEFLAVTVLSMVLTPFITDLGYYSAVSSQQLSLPGILTTNRYSLQDEGQEKKLENHLIVIGYGVS
GRNVGIAAQKASIPYMVIEINPETVRREKLNGIDIIYGDAAQKAVLEHAGIKNARSIVITAGNPVSTWQI
IEVAKRLNPDIHIIARTHFLDTIDSFYALGADEVISDEFECSIELFSRVLNKYMVPVKEIETMNTQLRAD
HYRMLRGPEIQRKSVSATSLDFSDVEIKSIRVEKHSEAAGKTLGDLDLRKKYGVTVLAISRNHRLMYDLR
AETELNPDDILLVISPPEQLEEIRELFENGA
' />
			      <input type="submit" name="button" id="button" value="W.H.A.T" />
			      </form></td>
			  
			    </tr>
		    </table></td>
	      </tr>
		  </table>
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        </ul>
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